I have nothing supporting this, it’s all just speculation, but first of all, what do you mean ‘collide’? At this scale, you need to be specific. Kinetic interactions are mediated by electromagnetism, so if that’s what you mean by ‘collide’, I already explained that.
Anyways, I’m guessing your question was something like, why doesn’t an electron fly into the proton and displace the quarks inside of it, and here is my answer for you:
The three quarks which constitute the proton are in a sort of equilateral triangle formation. If the down quark were to move closer to one of the two up quarks, the up quarks would have to move away from each other due to their own repulsion, and therefore the down quark makes no progress in distance getting closer to either of the up quarks… An up quark couldn’t move closer to either the down quark or the other up quark for similar reasons - all the charges are balanced and no headway can be made. An up quark can’t move closer to the down quark, because it is being repulsed by the other up quark.
Now realistically, these quarks are inseparable. Because there is nothing between them, they will stay in their arrangement more or less indefinitely.
As an electron approaches, it doesn’t matter how close it gets, its not ever going to separate the three quarks, because if one quark moves, the other 2 quarks move right along with it, and nothing short of a particle accelerator can make it otherwise.
Just keep in mind that the quarks in a proton are literally as close together as they can possibly be, and only when you fire two protons directly at each other at high speeds does quark displacement become a possibility.
Then you have the weak nuclear force, protons changing into neutrons, neutrons changing into protons, and I have no friggin idea how to explain that at all.
Another explanation is that the repulsion from the negative charge of the down quark is enough to maintain a distance between the proton and a nearby electron. Remember, I am assuming that there is no such thing as electromagnetic attraction - only electromagnetic repulsion and path of least resistance, so nothing would be causing the electron to accelerate closer towards the atomic nucleus other than that direction being the path of least resistance; once it came within a close enough proximity to the negative charge of the down quark, it would no longer be the path of least resistance.
Also, here are a few other things that might play some sort of role in everything: down quarks are more massive than up quarks; someone once told me that the ‘flavor-charge’ of quarks should not be considered the exact same thing as electromagnetic charge